MmuEX6101243 @ mm9
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52119406-52125832:-
Coord C1 exon
chr2:52125728-52125832
Coord A exon
chr2:52123214-52123321
Coord C2 exon
chr2:52119406-52119717
Length
108 bp
Sequences
Splice sites
3' ss Seq
AGAGTCTCTTTACTTTTCAGAAA
3' ss Score
7.76
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
CATTTATACACTATTGACTGGAATAAAGACAAAACCAAGATTCATGTGATGCCGGATACACCAGATATTTTGCAAGCCAAGCAGAATCAAACACTTTACAGTCAG
Seq A exon
AAATCCTATAGACTTGGTTGGGAAGAGGCTCTGAAGAAAGGCTATGATCTCCCTGTTGATGCGATTTCTGTCCAGCTGGCCAAGACATCAAGGGACATTGCTAGTGAC
Seq C2 exon
TTTAAATATAAACAAGGCTACCGGAAACAACTGGGACACCATATTGGATTCCTCAGTGTGCAAGATGACCCAAAGCTTGTGCTATCAATGAATGTAGCCAAAATGCAGAGCGACAGGGAGTACAAGAAGGACTTTGAGAAGTGGAAAACCAAATACACCAGCCCTGTGGACATGCTGGGGGTGGTGTTGGCCAAGAAGTGCCAGGCCTTGGTCAGTGATGCTGACTACAGGAACTACCTACACCAGTGGACGTGCCTACCTGACCAGAATGACGTCATCCAAGCTAAAAAGGTCTATGAGCTACAAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'53-55,'53-54,54-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF118973=DUF3417=PU(91.3=60.6),PF0088013=Nebulin=PU(55.2=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGATTCATGTGATGCCGGA
R:
ATGTCCACAGGGCTGGTGTAT
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: