GgaEX6043271 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36885635-36887236:-
Coord C1 exon
chr7:36887129-36887236
Coord A exon
chr7:36886059-36886370
Coord C2 exon
chr7:36885635-36885838
Length
312 bp
Sequences
Splice sites
3' ss Seq
TACAATATTTATAATTTCAGTAC
3' ss Score
4.88
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AAACAATACAAGCTCGACTGGCAGGAAATGATAAAGAAGGGCTATGACCTCACACCTGAAGCCATTTCAGTGAAAGCTGCCAAAGCTTCAAGGGACATTGCAAGCGAC
Seq A exon
TACAAATACAAAGAGGGTTACCGCAAGCAACAGGGACATCATATTGGATTCCGGAGCTTACAGGATGATCCGAAGATGATGTGGTCTATGCAAGTAGCTAAGATGCAGAGTGAGAGGGAGTATAAGAAAGATTTTGAAAAGTGGAAGACAAAGTTTAACATGCCTGTGGATATGTTAGGCTTCCTTCTGGCTAAGAAATGTCAGGAATTGGTTAGTGATATAGACTACAAACACATGCTACACCGCTGGACTTGTCTACCAGACCAAAATGATGTCACCCAAGCAAAGAGGGTCTACGAACTACAGAGTGAT
Seq C2 exon
AATCTTTATAAGTCAGATCTACAGTGGCTCAAAGGCATAGGATGGAGTCCTTTGGGATCTCTGGAGTCCGAAAAGAACAAGAAAGCTTCTGAAATACTAAGTGAAAAGAAGTACCGGCAGCATCCAGATACTATTAAGTTCACAAGTATCCCAGATGCCATGAATATCATCTTAGCAAAATCTAATGCCAAAAACAGAAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'40-40,'40-39,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.074
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
C2:
PF0088013=Nebulin=PD(37.9=16.2),PF0088013=Nebulin=PU(55.2=23.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATACAAGCTCGACTGGCA
R:
ATCACTTCTGTTTTTGGCATTAGA
Band lengths:
310-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]