MmuEX6101244 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52263496-52267801:-
Coord C1 exon
chr2:52267694-52267801
Coord A exon
chr2:52263886-52264197
Coord C2 exon
chr2:52263496-52263699
Length
312 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTTTCCTGATTTCAGTTT
3' ss Score
8.34
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
AAATCCTATAGACTTGGTTGGGAAGAGGCTCTGAAGAAAGGCTATGATCTCCCTGTTGATGCGATTTCTGTCCAGCTGGCCAAGACATCAAGGGACATTGCTAGTGAC
Seq A exon
TTTAAATATAAACAAGGCTACCGGAAACAACTGGGACACCATATTGGATTCCTCAGTGTGCAAGATGACCCAAAGCTTGTGCTATCAATGAATGTAGCCAAAATGCAGAGCGACAGGGAGTACAAGAAGGACTTTGAGAAGTGGAAAACCAAATACACCAGCCCTGTGGACATGCTGGGGGTGGTGTTGGCCAAGAAGTGCCAGGCCTTGGTCAGTGATGCTGACTACAGGAACTACCTACACCAGTGGACGTGCCTACCTGACCAGAATGACGTCATCCAAGCTAAAAAGGTCTATGAGCTACAAAGTGAG
Seq C2 exon
AATATGTATAAGTCTGACCTAGAGTGGCTGAGAGGCATAGGATGGAGTCCCCTGGGTTCTTTGGAAGCAGAAAAGAACAAGCGGGCTTCAGAAATCATCAGTGAGAAGAAATACCGCCAACCTCCAGACAGAAATAAGTTCACCAGCATCCCTGACGCCATGGACATAGTTCTGGCTAAAACAAATGCCAAAAACAGGAGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'60-67,'60-66,61-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
C2:
PF0088013=Nebulin=PD(37.9=16.2),PF0088013=Nebulin=PU(55.2=23.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTATAGACTTGGTTGGGAAGAGG
R:
GTCACTCCTGTTTTTGGCATTTGT
Band lengths:
310-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types