RnoEX6016804 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37785365-37789472:-
Coord C1 exon
chr3:37789365-37789472
Coord A exon
chr3:37785764-37786075
Coord C2 exon
chr3:37785365-37785568
Length
312 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTTTCCTGATTTCAGTTT
3' ss Score
8.34
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
AAATTCTACAGACTTGGTTGGGAAGAGGCTCTGAAGAAAGGCTACGATCTCCCTGTTGATGCAATTTCTGTCCAGCTGGCCAAGACATCAAGGGACATTGCTAGTGAC
Seq A exon
TTTAAATATAAACAAGGCTACCGGAAACAACTGGGACACCATATTGGATTCCTGAGCGTGCAAGATGACCCAAAGCTTGTGCTATCGATGAATGTAGCCAAAATGCAAAGTGAAAGAGAGTACAAGAAAGACTTTGAGAAGTGGAAGACCAAATACACCAGCCCTGTGGACATGCTGGGTGTGGTGTTGGCCAAGAAGTGCCAGGCCTTGGTCAGTGATGTGGACTACAAGAACTACCTACACCAGTGGACGTGCTTGCCTGACCAGAATGACGTCATCCAAGCTAAAAAGGTCTATGAGCTGCAAAGTGAG
Seq C2 exon
AATATGTATAAGTCTGATCTAGAGTGGCTGAGAGGCATAGGATGGAGTCCCCTGGGTTCTTTGGAAGCAGAAAAGAACAAGCGGGCTTCAGAAATCATCAGTGAAAAGAAATACCGCCAACCTCCAGACAGAAATAAGTTTACCAGCATTCCTGATGCCATGGACATAGTTCTGGCTAAAACAAATGCCAAAAACAGGAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'53-56,'53-55,55-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
C2:
PF0088013=Nebulin=PD(37.9=16.2),PF0088013=Nebulin=PU(55.2=23.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCTACAGACTTGGTTGGGA
R:
TCGCTCCTGTTTTTGGCATTTG
Band lengths:
310-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]