GgaEX6043277 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36857179-36858806:-
Coord C1 exon
chr7:36858708-36858806
Coord A exon
chr7:36857492-36857593
Coord C2 exon
chr7:36857179-36857286
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCCTCTGTTCTAGATT
3' ss Score
12.65
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AGAAAGTATCGTACAAAAGCCGAAACACTTCACTTTACTCCAGTGGCAGACAGAGTTGATTATGTCACAGCGAAGAAAAGTGGTGAAATTCTTAGTGAT
Seq A exon
ATTAAATACCACAAAGATTGGAATGAGGTTAAGTCAAATTATACTCTAACTGATACACCGCAGCTAGATATGGCACGAGAGGCGGCCAGAATTCTTAATCAG
Seq C2 exon
AGTTTATACAAGGAAAGCTGGGAGAAAGAGAAAGCCACTGGTTATCTCTTACCTCCTGACACTGTGCAGATCCGTCATGCCAAACACTCAAATGATGTCCAAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'81-83,'81-82,82-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.083
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(30.8=24.2),PF0088013=Nebulin=PU(55.2=48.5)
A:
PF0088013=Nebulin=PD(37.9=32.4),PF0088013=Nebulin=PU(55.2=47.1)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGTATCGTACAAAAGCCGA
R:
TTTGGACATCATTTGAGTGTTTGGC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]