MmuEX6101267 @ mm9
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52065848-52066449:-
Coord C1 exon
chr2:52066351-52066449
Coord A exon
chr2:52066070-52066171
Coord C2 exon
chr2:52065848-52065955
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCCATGCCTCTCATTTTTAGATT
3' ss Score
10.62
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AAAAAATATCGCACAAAAATAGAAACTCTCAACTTCACTCCTGTGGATGACAGAGTGGATTATGTGACAGCAAAACAGAGCAGTGAGATCCGAGATGAT
Seq A exon
ATTAAATATCGCAAAGATTGGAATGCCATCAAGTCAAAGTATACCCTTACAGAAACCCCACTGCTGCACACTGCCCAGGAGGCTGCCCGGATCCTGGACCAG
Seq C2 exon
TACCTCTACAAGGAAGGCTGGGAGAAACAGAAAGCCACAGGCTACATTCTGCCACCCGATGCTGTGCCATTCGTTCATGCCCATCATTCCAGCGATGTTCAAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'100-101,'100-100,101-101=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(28.0=21.2),PF0088013=Nebulin=PU(55.2=48.5)
A:
PF0088013=Nebulin=PD(37.9=32.4),PF0088013=Nebulin=PU(55.2=47.1)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCGCACAAAAATAGAAACTCTCA
R:
CTCACTTTGAACATCGCTGGA
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: