RnoEX6016827 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37723407-37723992:-
Coord C1 exon
chr3:37723894-37723992
Coord A exon
chr3:37723628-37723729
Coord C2 exon
chr3:37723407-37723514
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCCATGCCTCTCATTTTTAGATT
3' ss Score
10.64
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AAAAAATACCGCACGAAAATAGAAACTCTCAACTTCACTCCTGTGGATGACAGAGTGGATTACGTGACAGCGAAACAAAGCAGTGAGATCCGAGATGAC
Seq A exon
ATTAAATATCGGAAAGATTGGAACGCCATCAAATCAAAGTATACCCTTACAGAAACCCCACTGCTGCACACTGCCCAGGAGGCTGCCCGGATCCTGGACCAG
Seq C2 exon
TACCTCTACAAGGAAGGTTGGGAAAAACAGAAAGCCACGGGCTACATCCTGCCACCTGATGCTGTCCCATTTGTTCATGCCCACCATTCCAGTGACGTTCAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'92-98,'92-96,93-98=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(28.0=21.2),PF0088013=Nebulin=PU(55.2=48.5)
A:
PF0088013=Nebulin=PD(37.9=32.4),PF0088013=Nebulin=PU(55.2=47.1)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCGCACGAAAATAGAAACTCTCA
R:
CTCACTCTGAACGTCACTGGA
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]