GgaEX6043292 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34719896-34720908:-
Coord C1 exon
chr7:34720804-34720908
Coord A exon
chr7:34720405-34720512
Coord C2 exon
chr7:34719896-34720003
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTAATTTTTCTTAGGTT
3' ss Score
10.04
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATCAAGTACAAATCTGATGCAGACAAGATGAAGAGCAAATACACTGTGGTCATGGACACTCCCGTCTATGTCCAGAATATCCTCAGTGGCTTGAATGCCAGTGAA
Seq A exon
GTTATCTATCGTGGTGACTACTTAAAAAAAGTTAGAGGCAAAATGATTCCTACTGACAAAACAGTAGATTTGCAGCGGGCACATCATGCAAACAAGATACAGAGTGAA
Seq C2 exon
AATTTGTATCGCTGGGCTGGTTTGAAAGCTCTTCCAACGGGATACAGTCTTCCCAAAGATACTCCTGGCTTCCAGCATGCTAAACATGTCCAGCACATTGGCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'27-27,'27-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.083
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4)
A:
PF0088013=Nebulin=PU(61.5=44.4)
C2:
PF0088013=Nebulin=PD(30.8=22.2),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTACAAATCTGATGCAGACA
R:
ATCACTGCCAATGTGCTGGAC
Band lengths:
212-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]