MmuEX6101284 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52197797-52200730:-
Coord C1 exon
chr2:52200626-52200730
Coord A exon
chr2:52199404-52199511
Coord C2 exon
chr2:52197797-52197901
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTACCTCTCTCTGCACCCAGGCT
3' ss Score
9.44
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATCAAGTATAAAGCTCACGTGCAGAAGACAAGGAATGACTACAAGCTGGTGACTGACACACCGGTTTACGTTCAGGCAGTCAAGAGTGGGAAGCAGCTGAGTGAT
Seq A exon
GCTGTCTACCACTATGACTACGTGCACAGTGTCAGAGGCAAAGTGGCCCCAACTACAAAAACGGTGGATCTGGACCGGGCCCTCCATGCATACAAGCTTCAGAGTGAG
Seq C2 exon
AATTTGTACAAGAAAGGCCTGCGCTTCCTGCCCACTGGGTACAGGCTCCCTGTTGATACCCCTCATTTCAATCACACCAAGGATACCCGCTACATGAGCAGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'122-130,'122-129,123-130=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
A:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(64.0=44.4)
C2:
PF0088013=Nebulin=PD(28.0=20.0),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTATAAAGCTCACGTGCAGA
R:
GCTCATGTAGCGGGTATCCTTG
Band lengths:
203-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types