RnoEX0058987 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37710500-37713342:-
Coord C1 exon
chr3:37713238-37713342
Coord A exon
chr3:37712170-37712277
Coord C2 exon
chr3:37710500-37710604
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTACCTCTCTCTGCACCCAGGCT
3' ss Score
9.44
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATCAAGTATAAAGCTCATGTGCAGAAGACGAGGAATGACTACAAGCTGGTGACTGACACACCGGTGTACGTCCAGGCCGTCAAGAGTGGGAAGCAGCTCAGTGAT
Seq A exon
GCTGTCTACCACTATGACTACATACACAGTGTCAGAGGCAAAGTGGCCCCAACTACCAAGACTGTGGATCTGGACCGGGCCCTCCACGCATATAAGCTTCAGAGTGAG
Seq C2 exon
AATCTGTACAAGAAAGGCCTGCGTTTCCTGCCTACTGGGTACAGGCTCCCCGTTGATACCCCTCATTTCAACCACACCAAGGACACCCGCTACATGAGCAGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'110-118,'110-117,111-118
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
A:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(64.0=44.4)
C2:
PF0088013=Nebulin=PD(28.0=20.0),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTATAAAGCTCATGTGCAGA
R:
CTCATGTAGCGGGTGTCCTTG
Band lengths:
202-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]