GgaEX6043296 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36844341-36845063:-
Coord C1 exon
chr7:36844959-36845063
Coord A exon
chr7:36844681-36844779
Coord C2 exon
chr7:36844341-36844451
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTAATTGCCTTACAGAAT
3' ss Score
8.76
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TTGATCTACAAATCAGATTTCTTTAAGTTGCAAGGACACTTGATTTCCTTGCCGTTTACTCCTCAGGTGTTGCACTGCCGCTATGTTGGGGACATCACAAGTGAT
Seq A exon
AATAAATACAAAGAGGATCTGAAGTGGTTGCAAGGCTTGGGCTGCTTCCTTTATGATACTCCTGATATGGTCCGTGCTCGTCAGCTGCGTAAGCTTTGG
Seq C2 exon
TCTAATTATGTATATACTGATAGCGCAAAGAAGATGCGGGATAAATACAGTGTGGTATTGGATACTCCTGGATACAGGACTGTTCAGGAACTAAAAACCCATTTGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'106-106,'106-105,107-106=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=33.3),PF0088013=Nebulin=PU(48.3=42.4)
C2:
PF0088013=Nebulin=PD(44.8=35.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACACTTGATTTCCTTGCCG
R:
GGGTTTTTAGTTCCTGAACAGTCCT
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]