GgaEX6043296 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34717365-34718087:-
Coord C1 exon
chr7:34717983-34718087
Coord A exon
chr7:34717705-34717803
Coord C2 exon
chr7:34717365-34717475
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTAATTGCCTTACAGAAT
3' ss Score
8.76
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TTGATCTACAAATCAGATTTCTTTAAGTTGCAAGGACACTTGATTTCCTTGCCGTTTACTCCTCAGGTGTTGCACTGCCGCTATGTTGGGGACATCACAAGTGAT
Seq A exon
AATAAATACAAAGAGGATCTGAAGTGGTTGCAAGGCTTGGGCTGCTTCCTTTATGATACTCCTGATATGGTCCGTGCTCGTCAGCTGCGTAAGCTTTGG
Seq C2 exon
TCTAATTATGTATATACTGATAGCGCAAAGAAGATGCGGGATAAATACAGTGTGGTATTGGATACTCCTGGATACAGGACTGTTCAGGAACTAAAAACCCATTTGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'34-32,'34-31,35-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=33.3),PF0088013=Nebulin=PU(48.3=42.4)
C2:
PF0088013=Nebulin=PD(44.8=35.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACACTTGATTTCCTTGCCG
R:
GGGTTTTTAGTTCCTGAACAGTCCT
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]