RnoEX6016845 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37706631-37708241:-
Coord C1 exon
chr3:37708137-37708241
Coord A exon
chr3:37707116-37707214
Coord C2 exon
chr3:37706631-37706741
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCTTTTGCCCCGCAGATT
3' ss Score
12.44
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
TTGATCTACAAATCAGACTTCTTCAAGATGCAGGGACACATGATCTCGCTGCCATACACACCCCAAGTGTTGCACTGTCGCTACGTGGGAGACATCACCAGTGAC
Seq A exon
ATTAAATACAAAGAGGACCTGCAGATCTTGAAGGGACTTGGCTGCTTCCTGTATGACACCCCTGACATGGTCCGCTCCCGGCACCTAAGGAAACTCTGG
Seq C2 exon
TCGAATTACCTGTACACGGATAAAGCCAGGAAGATGCGAGACAAATACAAAGTGGTGCTTGATACCCCAGAGTACAGAAAAGTGCAGGAACTGAAGACACATCTGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'116-124,'116-123,117-124=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(53.6=42.9)
A:
PF0088013=Nebulin=PD(39.3=33.3),PF0088013=Nebulin=PU(48.3=42.4)
C2:
PF0088013=Nebulin=PD(44.8=35.1),PF0088013=Nebulin=PU(55.2=43.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACATGATCTCGCTGCCAT
R:
TGTGTCTTCAGTTCCTGCACT
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]