GgaEX6044308 @ galGal4
Exon Skipping
Gene
ENSGALG00000006188 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr8:14089017-14090231:+
Coord C1 exon
chr8:14089017-14089203
Coord A exon
chr8:14089681-14089754
Coord C2 exon
chr8:14090145-14090231
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATACAGTTTCTTTTTCTTAGATG
3' ss Score
5.95
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAGGCTTTGGCACAAGCACTTTGGGTAGACTATAAACGCATGGATGACCCTGACTGCTATTTTTACTCACTGCCTCGAGAGCTGGAAAGCAAGCGGGATCGGATGGCTCAGCTACTTCAAGAAGTTGGGCTGACACCGGTTATTCCAGAAGGAGGATACTTTATGATTGTTGATGTTTCTACATTAA
Seq A exon
ATGTGGATCTCCCGGATGTAGATGAGAATCAACCTTATGATTATAAATTTGTCCGATGGATGATATCATCCAAG
Seq C2 exon
AAACTCTCAGCAATTCCTCTTTCAGCGTTCTGTGGGCCCGAGACAAAAAGGCAATTTGAAAAATATATACGTTTTTGCTTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188-'25-20,'25-19,26-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.2=100)
A:
PF0015516=Aminotran_1_2=FE(6.3=100)
C2:
PF0015516=Aminotran_1_2=PD(7.3=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGAGAGCTGGAAAGCAAG
R:
ATTGCCTTTTTGTCTCGGGCC
Band lengths:
170-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]