MmuEX6074468 @ mm9
Exon Skipping
Gene
ENSMUSG00000040213 | Ccbl2
Description
cysteine conjugate-beta lyase 2 [Source:MGI Symbol;Acc:MGI:2677849]
Coordinates
chr3:142397438-142401275:+
Coord C1 exon
chr3:142397438-142397624
Coord A exon
chr3:142400736-142400809
Coord C2 exon
chr3:142401189-142401275
Length
74 bp
Sequences
Splice sites
3' ss Seq
ACCTTTCCCTGTGGTTACAGGTG
3' ss Score
9.97
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCAGCCTTGGCCGAGGCGTTTTGGATCGATATCAAGCGCATGGATGACCCTGAGTGTTACTTTAATTCTCTGCCAAAGGAATTAGAAGTAAAGAGAGATCGGATGGTCCGTTTACTTAACAGCGTTGGCCTGAAACCCATTGTTCCTGACGGGGGTTACTTCATCATTGCTGATGTGTCTTCATTAG
Seq A exon
GTGCTGACCTCTCGGACATGAACAGCGATGAGCCTTATGACTATAAGTTTGTGAAGTGGATGACGAAACATAAG
Seq C2 exon
AAACTGACAGCCATTCCTGTTTCTGCCTTCTGCGACTCCAAGTCTAAACCACACTTTGAGAAGCTGGTGCGGTTTTGCTTTATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040213-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.2=100)
A:
PF0015516=Aminotran_1_2=FE(6.3=100)
C2:
PF0015516=Aminotran_1_2=FE(7.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGATGACCCTGAGTGTT
R:
AGGCAGAAACAGGAATGGCTG
Band lengths:
178-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: