HsaEX6032001 @ hg38
Exon Skipping
Gene
ENSG00000137944 | KYAT3
Description
kynurenine aminotransferase 3 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr1:88943005-88949277:-
Coord C1 exon
chr1:88949091-88949277
Coord A exon
chr1:88943350-88943423
Coord C2 exon
chr1:88943005-88943091
Length
74 bp
Sequences
Splice sites
3' ss Seq
AATTTTCATTGTGGTTTTAGATC
3' ss Score
7.5
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAAGCCTTGGCTCAAGCTTTCTGGATTGACATCAAGCGCATGGATGACCCAGAATGTTACTTTAATTCTTTGCCAAAAGAGTTAGAAGTAAAAAGAGATCGGATGGTACGTTTACTTGAAAGTGTTGGCCTAAAACCCATAGTTCCTGATGGAGGATACTTCATCATCGCTGATGTGTCTTTGCTAG
Seq A exon
ATCCAGACCTCTCTGATATGAAGAATAATGAGCCTTATGACTATAAGTTTGTGAAATGGATGACTAAACATAAG
Seq C2 exon
AAACTATCAGCCATCCCCGTTTCAGCATTCTGTAACTCAGAGACTAAATCACAGTTTGAGAAGTTTGTGCGTTTTTGCTTCATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137944_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.1=100)
A:
PF0015516=Aminotran_1_2=FE(14.5=100)
C2:
PF0015516=Aminotran_1_2=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAAGCGCATGGATGACC
R:
TGAAACGGGGATGGCTGATAG
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains