GgaEX6044345 @ galGal3
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16712725-16714028:+
Coord C1 exon
chr8:16712725-16712860
Coord A exon
chr8:16713591-16713701
Coord C2 exon
chr8:16713924-16714028
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCCCACATGTTTTAATCAAGGCT
3' ss Score
2.3
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCAAATCACAAGCCTTTCTGAAGACCTGAAAAGAAAGGAGGAACTCAGAAGAAAGGCTAGTGAGGAACTTCTTGGAAAGCTAAATTCTGTTAACTCTGAAAATGAGAAGATTTATCTTGAAAATGAAAAACTAAAG
Seq A exon
GCTTGCCTTGCTGCTTTGGAAATCAGTACTGTTTCTGTTGAAAATGACCTGCTATGTCTGCAAGAAAAGACCAAGCTACAGGAAAACATTGTTGAAGACTGTAAAAATCAG
Seq C2 exon
GTACGAGAATTAAAAGCAGAAGTAGAAGTACTGAAATCCAGGTATAAAATCATCTTCAGTGAAAACAAGAGTATAAGAGAAAGCAAATGTTTAGAAGTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF048997=MbeD_MobD=PD(21.9=30.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATCACAAGCCTTTCTGA
R:
AGACTTCTAAACATTTGCTTTCTCTT
Band lengths:
236-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]