HsaEX6031929 @ hg19
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86824470-86836836:-
Coord C1 exon
chr1:86836701-86836836
Coord A exon
chr1:86826109-86826219
Coord C2 exon
chr1:86824470-86824574
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATCTATATCTTTTTTGCTAGACT
3' ss Score
5.54
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCAAATCATTAATCTTTTGGAAGATCTGAAGAAAATGGAAGACCATGGAAAAAATTCATGTGAAGAAATTCTTAGAAAAGTTCACTCAATTGAATATGAAAATGAAACTCTGAATCTTGAGAATACAAAATTAAAG
Seq A exon
ACTACACTTGCTGCTTTGAAGGATGAAGTTGTATCTGTTGAAAATGAACTCTCAGAATTGCAAGAAGTAGAAAAAAAACAGAAAACCCTTATTGAAATGTATAAAACTCAG
Seq C2 exon
GTACAAAAGTTGCAAGAAGCAGCTGAAATAGTAAAAAGCAGATGTGAAAATTTGCTACATAAAAATAACCAAATAACAAAAACCAAAAATAAAAATGTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417-'14-21,'14-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.283
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(14.5=100),PF115593=ADIP=FE(32.8=100),PF131661=AAA_13=FE(22.0=100)
A:
PF0003816=Filament=FE(11.6=100),PF115593=ADIP=FE(26.3=100),PF131661=AAA_13=FE(17.6=100)
C2:
PF0003816=Filament=FE(11.1=100),PF115593=ADIP=PD(23.1=94.3),PF131661=AAA_13=FE(16.6=100),PF059116=DUF869=PU(7.4=48.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTGGAAGATCTGAAGAAAATGG
R:
TTATGTAGCAAATTTTCACATCTGCT
Band lengths:
186-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)