RnoEX0062099 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251018657-251024416:+
Coord C1 exon
chr2:251018657-251018792
Coord A exon
chr2:251020557-251020667
Coord C2 exon
chr2:251024312-251024416
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGTCACGTATTTCTTTCTAGAGT
3' ss Score
6.35
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCAAATCTCTCATCTTCTGGAAGACTTGAGGAAAATGGAAACTCATGGGAAAAATTCATGTGAAGAAATTCTTAGAAAACTTCACTCACTGGAAGATGAAAATGAAGCCTTAAATATTGAGAATGTGAAATTAAAG
Seq A exon
AGTACACTTGATGCCTTGAAGGATGAAGTTGCTTCTGTTGAAAATGAACTTGTAGAACTTCAAGAAGTAGAAAAACGACAGAAAGCCCTCGTTGAAGGATACAGAACTCAG
Seq C2 exon
GTACAAAAGTTGGAAGAAGCAGCCGCAATGGTGAAAAGCAGATGTAAAAATTTACTCCATGAAAATAAACTAATAATAAATAAAAAAAACACAAAGCTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-'17-20,'17-19,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003816=Filament=PD(25.8=67.4),PF115593=ADIP=PU(30.5=69.6),PF0017016=bZIP_1=PU(53.7=47.8)
A:
PF0003816=Filament=FE(12.5=100),PF115593=ADIP=FE(35.0=100),PF0017016=bZIP_1=PD(41.5=45.9)
C2:
PF0003816=Filament=FE(11.8=100),PF115593=ADIP=FE(33.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATCTCTCATCTTCTGGAAG
R:
TCATGGAGTAAATTTTTACATCTGCT
Band lengths:
198-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]