GgaEX6044523 @ galGal3
Exon Skipping
Gene
ENSGALG00000008951 | FAM73A
Description
NA
Coordinates
chr8:19650635-19651417:-
Coord C1 exon
chr8:19651299-19651417
Coord A exon
chr8:19651064-19651136
Coord C2 exon
chr8:19650635-19650721
Length
73 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTATTTTTCATAGGAC
3' ss Score
9.75
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CTTACAGAGCATAGAGAAGCTCGTAATACCTACGGTCTAGATTCCCTTTGCCATTGTCCACTGTATGAAGAAGCAATGCACTTAGCAGAAGAAGGCAAAATTTATTCACGAGTCTTAAG
Seq A exon
GACTGAAATGTTTGAATGTCTCGGAGACAGTGACTTCCTTGCTAAGCTCCATTGTATTCGACAAGCTTTCCAG
Seq C2 exon
ATAATTCTTTCAGAAACAGCAAACAGAATATTTCTTGCTGAAAGTGGAAGAAAAATTTTATCTGCCCTAATTGTGAGAGCACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008951-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.1=100)
A:
PF102654=DUF2217=FE(4.4=100)
C2:
PF102654=DUF2217=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCTAGATTCCCTTTGCCA
R:
CGTGCTCTCACAATTAGGGCA
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]