HsaEX0024620 @ hg19
Exon Skipping
Gene
ENSG00000180488 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:24741]
Coordinates
chr1:78324623-78325811:+
Coord C1 exon
chr1:78324623-78324741
Coord A exon
chr1:78324999-78325071
Coord C2 exon
chr1:78325725-78325811
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTGTTTATTACATAGAAC
3' ss Score
7.8
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CTTGCAGAACACAGAGAAGTACGGCATACCTACAGCCTGGAGTCCCTTTGTCACTGCCCATTTTACGAGGAAGCCATGCATTTAGTTGAAGAAGGAAAAATTTACTCCAGAGTACTGAG
Seq A exon
AACTGAAATGTTGGAGTGCCTAGGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACAGGCTTTTCAG
Seq C2 exon
GTAATTCTTTCAGAATCAGCTAACAGGATATTCCTCGCTGAGAGCGGAAGGAAAATTTTATCAGCTTTAATTGTGAAAGCACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488_MULTIEX2-3/6=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.1=100)
A:
PF102654=DUF2217=FE(4.4=100)
C2:
PF102654=DUF2217=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACACAGAGAAGTACGGC
R:
AATTTTCCTTCCGCTCTCAGC
Band lengths:
173-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)