GgaEX6045466 @ galGal3
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2299181-2300741:+
Coord C1 exon
chr9:2299181-2299307
Coord A exon
chr9:2299807-2299976
Coord C2 exon
chr9:2300560-2300741
Length
170 bp
Sequences
Splice sites
3' ss Seq
AACTACTTGTTAATACATAGGGC
3' ss Score
4.84
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCCCAGCTTGCCCAAGAACCACTTTATACTTGCTGTAAATTGGAAGGGTATCTGCTTCTTGGATGAGTCAGAAAAGCGGCTCCTTGAGCTGACATTCCCAGAGATAACAGGCATCCATACAAACAG
Seq A exon
GGCAGTGAAATCATTTGGACAGAGTTGCACTCTCATCACCCTTCGTGCCGAAGAATTTGTCCTGACATCTGTGAACAGCATTGTCATCGCTGAACTGGTGGTGATGTTCCTGGAGGGGCTAAAGAAGAGATCACGATTTGCTGTGGCAATGCATGAGAAAAAATTCCAAG
Seq C2 exon
AAGACCCTGCCGTCCTGTCCTTCAAGAAGGGAGACTTGCTAATCTTGACCGAGGACAAAAGGCTAGATGCAAACTCTGGTTGGATCCATGCCCAGAATGACAGGACAGGCAAAACGGGGAATGTATTTCTGGAGGAGATGTACATCATTCCTTCACTCACAAAGCCCTCTGGTCAAGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'33-34,'33-33,34-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
PF0001823=SH3_1=PU(4.5=3.4)
C2:
PF0001823=SH3_1=PD(93.2=67.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAGTCAGAAAAGCGGC
R:
TGACCAGAGGGCTTTGTGAGT
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]