MmuEX6000749 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31967922-31971447:-
Coord C1 exon
chr18:31971321-31971447
Coord A exon
chr18:31969437-31969600
Coord C2 exon
chr18:31967922-31968103
Length
164 bp
Sequences
Splice sites
3' ss Seq
TGCGCCCTTTGTGCCCTCAGGGA
3' ss Score
11.03
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
GTCCCCGCCTTCCCAAGACGCAGCTGGTTTTAGCCATTAACTGGAAGGGGATGTACTTCCTGGATCAGAAGGAGAGGACACTGCTGGGGTTGTCCTTCGCAGAGGTCATGGGTCTGGTCGCCAACAG
Seq A exon
GGACGCCCCAGGAGGGAAGAAGCTGCTTCTCGCCACACTCCAGGAAGAGTACGAGTTCGTCTCCCCCAGCAGCGTGGCTATTGCAGAGATGGTGGCCTTGTTCTTGGGAGGCTTGAAGGAGAGATCTGTGTTCGCCATGGCCCTGCAGGACAGAAGGGCCACAG
Seq C2 exon
ACGATATCACCCTTCTGCCCTTCAAGAAAGGTGACTTACTGATCCTGACCAAGAAACAAGGACTGTTGGCCTCAGAGAACTGGGCTCTGGGTCAGAATGACAGAACTGGCAAGACAGGGCTGGTGCCTACTGCCTGTCTCTACACCATCCCCTCGGTCACCAAGCCCTCAACCCAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'42-49,'42-48,44-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
PF146041=SH3_9=PU(14.3=14.3)
C2:
PF146041=SH3_9=PD(83.9=77.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAGCTGGTTTTAGCCATT
R:
TGGTGTAGAGACAGGCAGTAGG
Band lengths:
257-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types