RnoEX0057491 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24754963-24758402:-
Coord C1 exon
chr18:24758276-24758402
Coord A exon
chr18:24756440-24756603
Coord C2 exon
chr18:24754963-24755144
Length
164 bp
Sequences
Splice sites
3' ss Seq
TGCTCCCTCTGTGCCCTCAGGGA
3' ss Score
10.89
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
GCCCCCGCCTTCCCAAGACGCAGCTGATTTTAGCCATTAACTGGAAGGGGATGTACTTCCTGGATCAGAAGGAGAGGACACTGCTGGGGTTGTCCTTCGCAGAGGTCATGGGTCTGATCGCCAACAG
Seq A exon
GGACGCCCCAGGTGGGAAGAGTCTGCTTCTGTCCACACTGCATGAAGAGTACGAGTTCGCCTCCCCCAGCAGCGTGGCCATTGCAGAGATGGTGGCCTTGTTCCTGGCAGGCTTGAAGGAGAGATCTGTGTTCGCCATGGCCCTGCAGGACAGGAAGGCCACAG
Seq C2 exon
ATGATGTCACCCTTCTGCCCTTCAAGAAAGGGGACTTACTGATCCTGACCAAGAAACAGGGACTGTTGGCCTCAGAGAACTGGGTCCTGGGCCAGAACGACAGAACCGGCAAGACAGGACTGGTGCCCACGGCCTGCCTCTACACCATCCCCTCAGTCACCAAGCCCTCAGCCCAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146041=SH3_9=PU(14.3=14.3)
C2:
PF146041=SH3_9=PD(83.9=77.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGATGTACTTCCTGGATCA
R:
GGTGACTGAGGGGATGGTGTA
Band lengths:
243-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]