GgaEX6045489 @ galGal4
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:841151-842899:+
Coord C1 exon
chr9:841151-841264
Coord A exon
chr9:841732-841885
Coord C2 exon
chr9:842823-842899
Length
154 bp
Sequences
Splice sites
3' ss Seq
GTGAATGTGGTTTCTTGCAGGGC
3' ss Score
8.91
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GCTCCAGAGGAGAGGAACTATCACATCTTCTATTGTATGCTGATGGGGATGAATCTAGAGCAGAAAAAGATGCTGAATCTGGGCACTGCCTCAGAGTACTCTTATCTCACTATG
Seq A exon
GGCAACTGCACGTCCTGTGACAGCCGGAACGATGCAAAGGAGTATGCCCACATCCGCTCAGCAATGAAGATCCTTATGTTCTCAGACTCTGAGCACTGGGACATCAGCAAACTGCTGGCTGCTATCCTGCATCTGGGGAATGTGGAGTTTGAAG
Seq C2 exon
CGGCTGTGTATGACAACTTGGACTGCTCTGATGTGATGGATTCACCACACTTTTCAATTGCAACCAAACTGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'6-8,'6-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
PF0006316=Myosin_head=FE(7.6=100)
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAACTATCACATCTTCTATTGT
R:
CAAGCAGTTTGGTTGCAATTGA
Band lengths:
179-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]