MmuEX6000726 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32001343-32005544:-
Coord C1 exon
chr18:32005431-32005544
Coord A exon
chr18:32003491-32003644
Coord C2 exon
chr18:32001343-32001419
Length
154 bp
Sequences
Splice sites
3' ss Seq
GAAGTGTCCTGTTCCTGCAGGGG
3' ss Score
8.61
5' ss Seq
TGGGTAACG
5' ss Score
4.85
Exon sequences
Seq C1 exon
GCTCCAGAGGAACGCAACTACCACATCTTCTACTGCATGCTGATGGGGATGAGCCCGGAAGAGAAGCAAATGCTGAGTCTGGGCATGCCCTCTGAGTACCATTACCTGACCATG
Seq A exon
GGGAGCTGCACATCCTCCGAGGGGCTCAGCGATGCCAAGGACTACGCACACGTCCGCTCGGCCATGAAGATCCTCCAGTTCTCAGACTCAGAGAACTGGGACATCAGCAAGCTGCTGGCAGCCATCCTCCACCTGGGGAATGTGGGGTTCATGG
Seq C2 exon
CTGCAGTCTTTGAGAACCTGGATTCGTCTGATGTGATGGAAACTCCAGCCTTCCCCTTGGCAATGAAGTTGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
PF0006316=Myosin_head=FE(7.5=100)
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGAGGAACGCAACTAC
R:
ACTTCATTGCCAAGGGGAAGG
Band lengths:
183-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types