GgaEX6046888 @ galGal3
Exon Skipping
Gene
ENSGALG00000014631 | ACVR1B
Description
NA
Coordinates
chrE22C19W28_E50C23:9564-13253:-
Coord C1 exon
chrE22C19W28_E50C23:13014-13253
Coord A exon
chrE22C19W28_E50C23:11600-11848
Coord C2 exon
chrE22C19W28_E50C23:9564-9794
Length
249 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGCTTCCCTCTCAAGGAC
3' ss Score
9.29
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTCTGACATGTCTGTGCTCTGACTGCAAGCAAGCCAACTCCACCTGCGAGACGGACGGCGCCTGCATGGTGTCCGTCTTCAACCTGGATGGGGTGAAGCACCACGTGCGGACCTGCATCCCCGAAGCCAAACTGATCCCTGCTGGGAAACCCTTCTACTGCCTGAGCTCCGAGGACCTGCGGAACACCCACTGCTGCTACTCTGATTTTTGCAACAAGATCGATTTAATGGTTCCCAGCG
Seq A exon
GACACCTGAAGGACAACGAGCCCCCATCAAGCTGGGGTCCGGTGGAGCTGGTGGCAGTGATTGCTGGGCCCGTCTTCCTCGTCTTCGTGGTCGTCATCATTGTTGTCTTCGTGTTTCATCACCACCAGCGCGTCTATCACAACCGGCAGCGGCTGGACATGGAGGACCCCTCTTGTGAAATGTGCCTGTCGAAGGACAAGACGCTGCAAGATCTCGTCTACGATCTCTCCACCTCTGGCTCTGGCTCAG
Seq C2 exon
GTTTGCCACTTTTTGTGCAGCGGACCGTGGCTCGGACGATCGTCCTGCAGGAGATCATTGGGAAGGGCCGCTTTGGGGAGGTGTGGCGCGGCCGATGGCGCGGAGGTGACGTGGCTGTGAAGATCTTCTCTTCCCGTGAGGAACGTTCCTGGTTCAGGGAAGCAGAAATCTACCAAACCGTTATGCTGCGACATGAGAACATCCTGGGCTTCATTGCTGCAGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014631-'3-4,'3-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.3)
A:
PF145751=EphA2_TM=WD(100=66.7),PF085157=TGF_beta_GS=PU(58.6=20.2)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCTTCTACTGCCTGAGCT
R:
GGATGTTCTCATGTCGCAGCA
Band lengths:
297-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]