DreEX6081188 @ danRer10
Exon Skipping
Gene
ENSDARG00000018968 | acvr1ba
Description
activin A receptor, type IBa [Source:ZFIN;Acc:ZDB-GENE-980526-527]
Coordinates
chr23:27880650-27883097:-
Coord C1 exon
chr23:27882855-27883097
Coord A exon
chr23:27880969-27881214
Coord C2 exon
chr23:27880650-27880880
Length
246 bp
Sequences
Splice sites
3' ss Seq
CTTTTACCTGCCTCTTTCAGGGA
3' ss Score
11.02
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTCTCAAGTGTAACTGCACTGCTTGTGAGAGCACAGGTTATGTGTGCGAGACAGATGGGGCCTGCATGGCCTCCACATCCTACATCAATGGGCAGGAAGAGCAGCAAGTACGGATCTGCATCCCTCGGGTCAGCCTGGTTCCTCCTGGACAGCCCATCTACTGCTTGAGCGCTAAAGGCCTGCTCAACACGCACTGCTGTTACACAGACTTCTGCAACAGCATCAACCTCCAGATTCCCAATG
Seq A exon
GGATTGCTGATGGTAAAGGAGGTAGTTGGGGTCCGGTAGAGCTGGTGGCAGTGATAGCAGGCCCGGTCTTCCTCTTTTGCCTGCTGCTTATCGTGGGAGTGCTCCTTTTCCAGCACCACCAACGAAACTATAACCACCGGCAGCGACTGGATGTTGAGGATCCATCCTGTGATCACCTGTACTTGGCCAAAGACAAGACCTTACAGGATCTCATCTTCGATCTGTCCACCTCTGGTTCAGGGTCTG
Seq C2 exon
GGCTGCCCTTGTTCGTTCAGAGGACTGTGGCCAGGACAATTGTACTGCAGGAGATCATAGGAAAAGGTCGCTTTGGGGAAGTGTGGAGGGGGAGATGGAGAGGAGGTGATGTGGCTGTGAAGATCTTTTCATCCAGGGAGGAACGTTCCTGGTTCCGTGAAGCTGAGATTTACCAAACCATCATGCTCCGCCATGAAAACATCTTGGGCTTCATTGCTGCTGATAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018968-'8-5,'8-4,11-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.3)
A:
PF085157=TGF_beta_GS=PU(58.6=20.5)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAGTACGGATCTGCAT
R:
CTTCACGGAACCAGGAACGTT
Band lengths:
305-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]