Special

DmeEX6009258 @ dm6

Exon Skipping

Gene
FBgn0011300 | babo
Description
The gene baboon is referred to in FlyBase by the symbol Dmel�abo (CG8224, FBgn0011300). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is 2R:8952339..8962796. Its molecular function is described by 6 unique terms, many of which group under: protein kinase activity; catalytic activity; phosphotransferase activity, alcohol group as acceptor; kinase activity; catalytic activity, acting on a protein. It is involved in the biological process described with 22 unique terms, many of which group under: cellular protein metabolic process; cell projection organization; primary metabolic process; brain development; response to abiotic stimulus. 51 alleles are reported. The phenotypes of these alleles manifest in: membrane-bounded organelle; vacuole; embryonic/larval brain; larval thorax; plasma membrane bounded cell projection. The phenotypic classes of alleles include: neuroanatomy defective; phototaxis defective; increased mortality; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in adult female stages.
Coordinates
chr2R:8954959-8959633:+
Coord C1 exon
chr2R:8954959-8955167
Coord A exon
chr2R:8959107-8959334
Coord C2 exon
chr2R:8959400-8959633
Length
228 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTGGGTTTTGTCCAGATT
3' ss Score
6.2
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATGTCTGCACAAGTCTCAAATCTTTCCGCCGGGCCGCTCCATCTGGTGTAACGACGGGCTGCACGGCGGACCAACCGCCCGCCCAGTGGGTCGCAATGGCGCCCACGCCTGCTGCAAGGACAGGGACTTCTGCAACCGATTTCTGTGGCCAAAGACGAAGGACCAGAGGAGTGATCGTGTCGAAGAAGGGCGGCAAATCTCCGTCCAAG
Seq A exon
ATTATGTGCCACACCGACTGACCAGCTGGGAGTTTGTGGCTATCATCCTAGGGGCCACCCTCTTCATTTGCTTCACGGGCACCAGTACGTGGTATTATTGCCAGCGTCGCAAGCGAATGGCTAGCGGAAGGACGTTTGCCAAGGAGGATTCGGCGTACGATCCTATTTTGAATGGTAATACAACCATACACGACATCATTGAGATGACCACCTCTGGTTCGGGTTCGG
Seq C2 exon
CTGGTCTTCCGCTGCTGGTGCAGCGTTCCATTGCCCGACAGGTGCAGCTGTGCCACGTTATCGGAAAGGGACGTTTCGGCGAGGTCTGGCGTGGACGCTGGCGAGGCGAAAACGTGGCGGTCAAGATCTTCTCTAGTCGCGAGGAGTGTTCCTGGTTCCGTGAGGCGGAAATCTATCAGACTGTTATGCTCCGCCACGAGAACATTTTGGGATTCATAGCTGCAGACAACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0011300-'3-8,'3-7,8-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0106418=Activin_recp=PD(57.8=73.2)
A:
PF085157=TGF_beta_GS=PU(55.2=20.8)
C2:
PF085157=TGF_beta_GS=PD(41.4=15.2),PF0006920=Pkinase=PU(22.2=81.0)


Main Inclusion Isoform:
FBpp0087739


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
FBpp0087740, FBpp0289826


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATCTGGTGTAACGACG
R:
GAAGATCTTGACCGCCACGTT
Band lengths:
305-533
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)