BtaEX6009691 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019337 | ACVR1C
Description
Bos taurus activin A receptor, type IC (ACVR1C), mRNA. [Source:RefSeq mRNA;Acc:NM_001192879]
Coordinates
chr2:38551517-38579994:+
Coord C1 exon
chr2:38551517-38551747
Coord A exon
chr2:38573705-38573944
Coord C2 exon
chr2:38579764-38579994
Length
240 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTCTTAATTAAAGCAT
3' ss Score
6.85
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTTTGAAGTGTGTTTGTCTTTTGTGTGACTCTTCAAACTTTACCTGCCAAACAGAAGGAGCATGTTGGGCTTCTGTTATGTTAACCAATGGAAAGGAACAGGTGATCAAGTCCTGTGTCTCTCTCCCAGAATTAAATGCACAAGTCTTCTGTCATAGTTCCAACAATGTTACCAAAACGGAATGCTGCTTCACAGATTTTTGCAACAACATAACACTGCACCTTCCAACAG
Seq A exon
CATCACCAAACGCCCCAAAGCTTGGACCCATGGAGCTGACCATTGTTGTCACCGTGCCAGTTTTCCTCCTGTCCATAGCTTCAGTGCTGACAGTATGGGCATGCCAAGGTCGACAGTGCACCTACAGAAAGAAAAAGAGACCGAATGTGGAGGAGCCCCTCTCTGAATGCAATCTGGTAAATGCTGGGAAAACTCTGAAAGATCTGATTTACGATGTGACTGCCTCTGGATCTGGCTCTG
Seq C2 exon
GTCTGCCTCTGTTGGTTCAAAGAACAATTGCAAGGACGATTGTACTTCAGGAAATAGTAGGAAAAGGTAGATTTGGTGAGGTCTGGCATGGAAGATGGTGTGGGGAAGATGTGGCTGTGAAAATATTCTCCTCCAGAGATGAAAGATCGTGGTTTCGAGAGGCAGAAATTTATCAGACTGTTATGCTGAGACATGAAAACATCCTTGGTTTCATTGCTGCTGATAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019337-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.2)
A:
PF085157=TGF_beta_GS=PU(58.6=21.0)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGAGCATGTTGGGCTT
R:
CCACATCTTCCCCACACCATC
Band lengths:
294-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]