GgaEX0018956 @ galGal3
Exon Skipping
Gene
ENSGALG00000012547 | F1NC97_CHICK
Description
NA
Coordinates
chr7:37873036-37880663:-
Coord C1 exon
chr7:37880433-37880663
Coord A exon
chr7:37875080-37875325
Coord C2 exon
chr7:37873036-37873266
Length
246 bp
Sequences
Splice sites
3' ss Seq
TCCCTTGTCTCTCCCCAAAGCCT
3' ss Score
8.76
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGCTCCAGTGCGTGTGCCAGCTGTGCGAGCACACCAACTTCACCTGCCAGACGGAGGGAGCGTGCTGGGCCTCGGTCATGCTAACCAACGGCAAGGAGGAGGTGATCAAATCCTGCGTGTCCCTCCCGGAGCTCAACGCCCAGGTCTTCTGCCACAGCTCCAAGAACATCACCAAGACTGAGTGCTGCTACACCGACATCTGCAACAACATCACCCTCCGCCTGCCCATAG
Seq A exon
CCTCCGAGTCCCCCAGCCGTGCTGCCGTGGGTCCCGTGGTGCTGGCAGTGACAGTGGCCGTGCCCATCTGCGTTCTGTCCCTCGTGGCAGTGCTGGCTGCCTGCATCTGCCAGGGCCGGCGCTGCGCCCGCGGCAGGACGAAGCCGCCCAACGTGGAGGAGCCGCTCTCCGAGTGCAACCTGGTCAGCTCGGGCAAGACGCTCAAGGACCTCATTTATGACATGACGACGTCTGGCTCTGGCTCTG
Seq C2 exon
GCTTACCTCTGCTCGTACAGAGAACCATTGCAAGGACTATCATTCTGCAGGAGATCGTAGGGAAGGGCCGCTTCGGGGAAGTGTGGCGTGGGAAGTGGTGCGGGGAGGACGTGGCTGTGAAAATCTTCTCCTCGAGAGACGAGCGGTCCTGGTTCCGGGAGGCAGAGATCTATCAGACGGTTATGCTGAGACACGAGAACATCCTGGGCTTCATTGCTGCTGATAACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012547-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.2)
A:
PF085157=TGF_beta_GS=PU(58.6=20.5)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACAGCTCCAAGAACAT
R:
GAAGCCCAGGATGTTCTCGTG
Band lengths:
295-541
Functional annotations
There are 0 annotated functions for this event