MmuEX0003672 @ mm10
Exon Skipping
Gene
ENSMUSG00000026834 | Acvr1c
Description
activin A receptor, type IC [Source:MGI Symbol;Acc:MGI:2661081]
Coordinates
chr2:58287681-58316023:-
Coord C1 exon
chr2:58315793-58316023
Coord A exon
chr2:58295926-58296165
Coord C2 exon
chr2:58287681-58287911
Length
240 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCTTTTAAACGGCAGCAT
3' ss Score
4.89
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
GACTGAAGTGTGTGTGTCTTTTGTGTGATTCTTCAAACTTCACCTGCCAAACGGAAGGAGCATGTTGGGCCTCCGTCATGCTAACCAACGGGAAAGAGCAGGTGATCAAATCGTGTGTGTCCCTCCCGGAACTAAATGCTCAGGTCTTCTGTCACAGTTCCAACAACGTGACCAAAACCGAATGTTGCTTCACAGACTTCTGCAACAATATCACACTGCACCTTCCCACAG
Seq A exon
CATCGCCAAATGCCCCTCGACTTGGTCCCACAGAGCTGACGGTTGTTATCACCGTGCCGGTTTGCCTCCTGTCCATAGCCGCCATGCTAACAATATGGGCGTGCCAGGACCGCCAGTGCACATACAGGAAGACTAAGAGACACAACGTGGAGGAAGCGCTGGCTGAGTACAGCCTTGTGAATGCAGGAAAAACACTCAAGGATCTGATCTACGATGCTACTGCCTCTGGCTCAGGCTCTG
Seq C2 exon
GTCTGCCTCTCTTGGTTCAAAGAACAATCGCAAGGACAATTGTACTTCAAGAAATCGTAGGAAAAGGTCGGTTTGGGGAAGTGTGGCACGGAAGATGGTGTGGAGAAGATGTGGCTGTGAAAATATTCTCCTCCAGGGATGAGAGATCTTGGTTCCGTGAGGCGGAAATTTATCAGACGGTGATGCTGAGACACGAGAACATCCTCGGTTTCATCGCAGCTGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026834_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.2),PF085157=TGF_beta_GS=PU(7.7=1.9)
A:
PF085157=TGF_beta_GS=PU(58.6=21.0)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTCCCGGAACTAAATGCT
R:
GTGTCTCAGCATCACCGTCTG
Band lengths:
306-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types