RnoEX0006467 @ rn6
Exon Skipping
Gene
ENSRNOG00000004828 | Acvr1c
Description
activin A receptor type 1C [Source:RGD Symbol;Acc:621789]
Coordinates
chr3:44284962-44311421:-
Coord C1 exon
chr3:44311191-44311421
Coord A exon
chr3:44291119-44291358
Coord C2 exon
chr3:44284962-44285192
Length
240 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTTAAACGGCAGCAT
3' ss Score
5.24
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
GACTGAAGTGTGTGTGTCTTTTGTGTGATTCCTCAAACTTTACCTGCCAAACCGAAGGAGCATGCTGGGCCTCTGTCATGCTAACCAACGGGAAAGAACAGGTGATCAAATCGTGCGTGTCCCTCCCGGAACTAAATGCTCAGGTCTTCTGTCACAGTTCCAACAACGTGACCAAGACCGAATGTTGCTTCACAGACTTCTGCAACAACATCACTCTGCACCTTCCCACAG
Seq A exon
CATCTCCAGATGCCCCTAGACTTGGCCCCACAGAGCTGACGGTTGTTATCACTGTACCTGTTTGCCTCCTGTCCATCGCAGCCATGCTAACGATATGGGCCTGCCAGGACCGCCAGTGCACATACAGGAAGACCAAGAGACACAATGTGGAGGAACCACTGGCAGAGTACAGCCTTGTCAATGCTGGAAAAACCCTCAAAGATCTGATTTATGATGCCACTGCCTCGGGCTCAGGATCTG
Seq C2 exon
GCCTGCCTCTTTTGGTTCAAAGAACCATCGCAAGGACAATTGTACTTCAAGAAATCGTAGGAAAAGGTCGGTTTGGGGAAGTGTGGCACGGAAGATGGTGTGGAGAAGATGTGGCTGTGAAAATATTCTCCTCCAGAGATGAGAGATCTTGGTTCCGTGAGGCAGAAATTTATCAGACGGTAATGCTGAGACATGAGAATATTCTCGGTTTCATCGCGGCCGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004828-'5-9,'5-6,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.2)
A:
PF085157=TGF_beta_GS=PU(58.6=21.0)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAATCGTGCGTGTCCCTC
R:
CTGCCTCACGGAACCAAGATC
Band lengths:
292-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]