GgaEX0019087 @ galGal4
Exon Skipping
Gene
ENSGALG00000012617 | ChALK5
Description
TGF-beta receptor type-1 precursor [Source:RefSeq peptide;Acc:NP_989577]
Coordinates
chr2:56031924-56047996:+
Coord C1 exon
chr2:56031924-56032053
Coord A exon
chr2:56040399-56040641
Coord C2 exon
chr2:56047766-56047996
Length
243 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTTGTTCACCATCAGGTC
3' ss Score
9.63
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATTTCTCGCGCGGGAGTGCGCGCACTGGGTCTGCGGGTTCAGGACCGGACTATGGCGTTACGGGGCACTCGGCGGCTCCGGGCCCTGCTGCGCCTGCTGGTAGCCGCGGTCCTGCTGCCCAGGGCGGCCG
Seq A exon
GTCCTACTCCAGGAAGACCAGCTTCTAGTCTAGGACCTGTGGAACTGGCAGCTGTTATTGCTGGACCTGTCTGCTTTGTCTGCATTTCATTGATGCTGATTCTGTATCTTTGTCATAACCGTACTGTAATTCATCATCGTGTGCCAAGTGAAGAAGATCCTTCATTGGATCGTCCCTTTATATCTGAAGGAACTACTTTGAAGGATTTAATTTATGATATGACAACTTCAGGCTCTGGATCAG
Seq C2 exon
GTTTACCTTTACTTGTGCAAAGAACAATTGCACGAACTATAGTACTCCAAGAAAGTATTGGTAAGGGTCGCTTTGGAGAAGTATGGAGGGGGAAATGGAGAGGAGAAGAAGTTGCTGTGAAGATCTTCTCTTCAAGAGAAGAGCGCTCATGGTTTCGAGAGGCAGAAATTTATCAAACAGTTATGCTACGACATGAAAACATTCTTGGATTCATAGCTGCGGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012617_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.159 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF085157=TGF_beta_GS=PU(58.6=20.7)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Skipping Isoform:
ENSGALT00000020598fB2286
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGCGTTACGGGGCAC
R:
GTTGTCCGCAGCTATGAATCCA
Band lengths:
308-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]