MmuEX0047110 @ mm9
Exon Skipping
Gene
ENSMUSG00000007613 | Tgfbr1
Description
transforming growth factor, beta receptor I [Source:MGI Symbol;Acc:MGI:98728]
Coordinates
chr4:47366094-47409457:+
Coord C1 exon
chr4:47366094-47366268
Coord A exon
chr4:47406119-47406361
Coord C2 exon
chr4:47409227-47409457
Length
243 bp
Sequences
Splice sites
3' ss Seq
TGATGTTTATTTCATTGGAGGAC
3' ss Score
0.84
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GGCGGGGAGGTGGGGCGAGGAGGGGCGAGGCTTCCTGAGGAGAAGCTGCGGCCGGGGCCGGGCCGGGCCACAAACAGTGGCGGCGGGACCATGGAGGCGGCGGCCGCTGCTCCACGTCGTCCGCAGCTCCTCATCGTGTTGGTGGCGGCGGCGACGCTGCTCCCGGGGGCGAAGG
Seq A exon
GACCTTTTTCAGAAAAGCAGTCAGCTGGCCTTGGTCCTGTGGAGCTGGCAGCTGTCATTGCTGGTCCAGTCTGCTTCGTCTGCATTGCACTTATGCTGATGGTCTATATCTGCCATAACCGCACTGTCATTCACCACCGTGTGCCAAATGAAGAGGATCCATCACTAGATCGCCCTTTCATTTCAGAGGGCACCACCTTAAAAGATTTAATTTATGATATGACAACATCAGGGTCTGGATCAG
Seq C2 exon
GTTTACCACTGCTTGTTCAAAGAACAATTGCCAGGACCATTGTGTTACAAGAAAGCATTGGCAAAGGTCGGTTTGGAGAAGTTTGGCGAGGCAAATGGCGGGGAGAAGAAGTTGCTGTGAAGATATTCTCTTCTAGAGAAGAGCGTTCATGGTTCCGAGAGGCAGAGATTTATCAGACTGTAATGTTACGCCATGAAAATATCCTGGGATTTATAGCAGCAGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007613_MULTIEX1-3/4=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146101=DUF4448=PD(66.7=53.8),PF085157=TGF_beta_GS=PU(58.6=21.8)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTTCCTGAGGAGAAGCT
R:
CGGAACCATGAACGCTCTTCT
Band lengths:
306-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: