BtaEX0036292 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018035 | TGFBR1
Description
Bos taurus transforming growth factor, beta receptor 1 (TGFBR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174621]
Coordinates
chr8:64570093-64614580:+
Coord C1 exon
chr8:64570093-64570222
Coord A exon
chr8:64605668-64605910
Coord C2 exon
chr8:64614350-64614580
Length
243 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTATTTCATTTGAGGCC
3' ss Score
3.29
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GCGGCGGCCGGGCCGGGCCGGGCCACAGGCAGTGGCGGCGGGACTATGGAGGCAGCGGCCGCTACTCCGCGTCCCCGGCTGTTCCTCCTCATGCTGGCGGCGGCGGCCACGCTGGTCCCGGAGGCAACGC
Seq A exon
GCCCTTTTACAGGAAAGCCATCATCTGGCCTTGGTCCTGTTGAACTGGCAGCTGTCATTGCTGGACCAGTCTGCTTTGTCTGTATCTCACTCATGTTGATGGTCTATATTTGCCATAACCGCACTGTCATTCACCATCGAGTGCCAAATGAAGAGGATCCCTCGTTAGATCGCCCTTTTATTTCAGAGGGTACAACGTTAAAAGATTTAATTTACGACATGACAACATCAGGTTCTGGATCAG
Seq C2 exon
GTTTACCATTGCTTGTTCAGAGAACAATTGCGAGAACTATTGTGTTACAAGAAAGTATTGGCAAAGGTCGTTTTGGAGAAGTTTGGCGAGGAAAATGGAGAGGAGAAGAAGTTGCTGTTAAAATATTCTCCTCTAGAGAAGAACGTTCATGGTTCCGTGAAGCAGAGATTTATCAGACTGTCATGTTACGTCACGAAAACATCTTGGGATTTATAGCAGCAGACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018035_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF085157=TGF_beta_GS=PU(58.6=21.8)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGGACTATGGAGGCA
R:
TCCCAAGATGTTTTCGTGACGT
Band lengths:
303-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development