GgaEX0019087 @ galGal3
Exon Skipping
Gene
ENSGALG00000012617 | Q06900_CHICK
Description
NA
Coordinates
chr2:57079139-57087559:+
Coord C1 exon
chr2:57079139-57079390
Coord A exon
chr2:57079962-57080204
Coord C2 exon
chr2:57087329-57087559
Length
243 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTTGTTCACCATCAGGTC
3' ss Score
9.63
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CATTACAATGTTACTGCCATCTATGCACAAAGGACAACTTTACCTGTGTGACAGATGGGCTTTGTTTTACCTCTGTAACACGGACTGCAGATAGAGTCATACGCAATAGCATGTGTATAGCAGAAATTGATCTGATTCCTCGAGACAGGCCATTTATTTGTGCACCATCCTTCAGAGATGGAGTTACTACTTTGCCTCATTGCTGTGACAGAGACCACTGCAATAAAATAGAACTTCCAATTCCAACACCAG
Seq A exon
GTCCTACTCCAGGAAGACCAGCTTCTAGTCTAGGACCTGTGGAACTGGCAGCTGTTATTGCTGGACCTGTCTGCTTTGTCTGCATTTCATTGATGCTGATTCTGTATCTTTGTCATAACCGTACTGTAATTCATCATCGTGTGCCAAGTGAAGAAGATCCTTCATTGGATCGTCCCTTTATATCTGAAGGAACTACTTTGAAGGATTTAATTTATGATATGACAACTTCAGGCTCTGGATCAG
Seq C2 exon
GTTTACCTTTACTTGTGCAAAGAACAATTGCACGAACTATAGTACTCCAAGAAAGTATTGGTAAGGGTCGCTTTGGAGAAGTATGGAGGGGGAAATGGAGAGGAGAAGAAGTTGCTGTGAAGATCTTCTCTTCAAGAGAAGAGCGCTCATGGTTTCGAGAGGCAGAAATTTATCAAACAGTTATGCTACGACATGAAAACATTCTTGGATTCATAGCTGCGGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012617-'6-4,'6-2,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.159 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=95.3)
A:
PF085157=TGF_beta_GS=PU(58.6=20.7)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGTAACACGGACTGCAG
R:
TCTTCTCCTCTCCATTTCCCCC
Band lengths:
292-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]