DreEX6019801 @ danRer10
Exon Skipping
Gene
ENSDARG00000052142 | acvr1bb
Description
activin A receptor, type IBb [Source:ZFIN;Acc:ZDB-GENE-131120-9]
Coordinates
chr6:2057040-2059250:+
Coord C1 exon
chr6:2057040-2057285
Coord A exon
chr6:2057409-2057657
Coord C2 exon
chr6:2059020-2059250
Length
249 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTCCTTGTTAGTGA
3' ss Score
7.6
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
CTCTGTTGTGTAACTGCACCGCTCCACACTGCGAGAGGGATGGCTTTAAGTGCGAGACGAACGGCGCGTGTGTGGCCTCCACCTCCGTCATTGAAGGACAGGAGCAACATGTGCGTCTCTGCATCCACAAGGAGAAGCTGGTTCCTCCAGGCCAGCCGTTCTACTGCCTCAGCGCTGAGGGTCTGATGAACACACACTGCTGCTACACCGACTACTGCAACAGCATCGACCTCAGGCTGCCAATCG
Seq A exon
TGACGAATGGGCCTGGTGCTGGGCAGGACTGGGGGCCGGTGGAGCTGACGGCGGTGGTGGCGGGCCCTGTGTTTGTGCTGTGTGTGCTGGTTCTGCTGGGACTCTTCCTCTTTCAGCACCACCAGCGGGCCTACGGGCACCGGCAGAGGCTGGAGGTGGAGGATCCCAGCACTGAGCACATGTTCCTGGCCAAGGACAAGACCCTGCAGGACCTCATCTATGACCTCTCCACCTCAGGATCAGGCTCAG
Seq C2 exon
GCCTGCCTCTGTTTGTGCAAAGGACCGTGGCTCGTACCATCGTCCTACAGGAGATCATCGGTAAAGGCCGCTTCGGTGAGGTGTGGAGAGGGAAGTGGAGAGGTGGAGACGTCGCAGTCAAGATCTTCTCCTCTCGGGAAGAACGATCCTGGTTTCGAGAAGCTGAAATCTACCAGACCATTATGTTGCGCCACGAGAACATTCTGGGCTTCATTGCTGCAGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052142-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.4)
A:
PF085157=TGF_beta_GS=PU(58.6=20.2)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAGGGTCTGATGAACAC
R:
TGCAGCAATGAAGCCCAGAAT
Band lengths:
295-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]