RnoEX6034146 @ rn6
Exon Skipping
Gene
ENSRNOG00000006934 | Acvr1b
Description
activin A receptor type 1B [Source:RGD Symbol;Acc:735207]
Coordinates
chr7:142839080-142844628:+
Coord C1 exon
chr7:142839080-142839319
Coord A exon
chr7:142839934-142840182
Coord C2 exon
chr7:142844398-142844628
Length
249 bp
Sequences
Splice sites
3' ss Seq
CACCTTACTCATTTTCTCAGGAC
3' ss Score
7.6
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTCTGCTGTGTGCATGCACCAGCTGCCTACAGACCAACTACACCTGCGAAACAGATGGGGCCTGCATGGTCTCCATCTTTAACCTGGATGGCATGGAGCACCACGTACGCACCTGCATCCCCAAGGTGGAGCTTGTGCCTGCTGGGAAGCCCTTCTACTGCCTGAGTTCAGAGGACCTGCGCAACACGCACTGCTGCTATATTGACTTCTGCAACAAGATTGACCTGAGGGTGCCCAGTG
Seq A exon
GACACCTCAAGGAGCCTGAGCACCCCTCCATGTGGGGCCCTGTGGAGCTGGTCGGCATCATTGCCGGTCCTGTCTTCCTCCTCTTCCTCATCATCATCATCGTCTTCCTGGTCATCAACTATCATCAGCGTGTCTACCACAACCGCCAAAGACTGGACATGGAGGACCCCTCATGTGAGATGTGTCTCTCCAAAGACAAGACGCTCCAGGATCTCGTCTACGATCTCTCCACTTCAGGATCGGGCTCAG
Seq C2 exon
GGTTACCCCTTTTTGTCCAGCGCACAGTGGCCCGAACCATTGTTTTACAAGAGATTATCGGCAAGGGCCGGTTTGGGGAAGTATGGCGTGGCCGCTGGAGGGGTGGTGATGTGGCTGTGAAAATCTTCTCTTCCCGTGAAGAGCGGTCGTGGTTCCGGGAGGCAGAGATCTACCAGACTGTCATGCTGCGCCATGAAAACATCCTTGGGTTTATTGCTGCTGACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006934-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.3)
A:
PF085157=TGF_beta_GS=PU(58.6=20.2)
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCATGGTCTCCATCTTT
R:
TTTCACAGCCACATCACCACC
Band lengths:
303-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]