GgaEX6046891 @ galGal3
Exon Skipping
Gene
ENSGALG00000014631 | ACVR1B
Description
NA
Coordinates
chrE22C19W28_E50C23:7870-9237:-
Coord C1 exon
chrE22C19W28_E50C23:9070-9237
Coord A exon
chrE22C19W28_E50C23:8429-8585
Coord C2 exon
chrE22C19W28_E50C23:7870-7994
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTTTGCTCTCTTAGGAA
3' ss Score
9.94
5' ss Seq
ACGGTATGG
5' ss Score
8.47
Exon sequences
Seq C1 exon
ACAACGGGACGTGGACACAGCTGTGGCTCGTCTCCGATTACCACGAGCACGGATCTCTCTTTGACTACCTGAACCGCTACACGGTGACCATAGAGGGGATGATCAAGCTTGCTCTGTCTGCTGCCAGCGGGCTGGCCCACCTGCACATGGAGATCGTGGGTACTCAGG
Seq A exon
GAAAGCCTGGGATTGCTCACAGAGACCTGAAATCCAAGAACATCTTGGTGAAGAAGAATGGCACGTGTGCCATTGCTGACCTGGGGCTCGCTGTGCGCCACGACTCCGTCACGGACACCATTGACATCGCCCCGAACCAAAGGGTTGGAACCAAACG
Seq C2 exon
ATACATGGCTCCCGAGGTCCTGGATGAAACCATCAACATGAAGCACTTTGATTCATTTAAGTGTGCTGATATCTACGCCCTGGGTTTGGTCTACTGGGAGATCGCTCGCAGGTGCAACGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014631-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.4=100)
A:
PF0006920=Pkinase=FE(18.1=100)
C2:
PF0006920=Pkinase=FE(14.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCGATTACCACGAGCAC
R:
GAGCGATCTCCCAGTAGACCA
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]