DreEX6081191 @ danRer10
Exon Skipping
Gene
ENSDARG00000018968 | acvr1ba
Description
activin A receptor, type IBa [Source:ZFIN;Acc:ZDB-GENE-980526-527]
Coordinates
chr23:27878599-27879234:-
Coord C1 exon
chr23:27879067-27879234
Coord A exon
chr23:27878823-27878979
Coord C2 exon
chr23:27878599-27878723
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACCATTATGATCTCCTACAGGGA
3' ss Score
8.36
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
ACAATGGCACATGGACACAGCTGTGGCTAGTGTCAGACTACCATGAGCATGGCTCATTATTTGACTATCTCAACCACTACTCCGTCACAATCGAGGGGATGATCAAGTTATCGCTTTCAGCCGCCAGCGGTCTGGCACATCTGCACATGGAGATCCTGGGCACACAGG
Seq A exon
GGAAACCAGGCATCGCACATCGTGACCTCAAATCCAAAAACATCTTGGTGAAAAAGAATGGTACTTGCGCCATAGCAGATCTAGGGCTCGCTGTACGGCACGAGTCTATCACTGATACTATAGACATTGCACCCAATCAGAGGGTGGGCACTAAAAG
Seq C2 exon
ATATATGGCCCCAGAGGTACTAGATGAAACGATCAACATGAAGCATTTTGATTCTTTCAAGTGTGCTGATATCTATGCTTTGGGACTGGTATATTGGGAGATTGCACGACGGTGTAATGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018968-'13-9,'13-7,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.4=100)
A:
PF0006920=Pkinase=FE(18.1=100)
C2:
PF0006920=Pkinase=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTAGTGTCAGACTACCA
R:
CCGTCGTGCAATCTCCCAATA
Band lengths:
258-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]