GgaEX7011845 @ galGal4
Exon Skipping
Gene
ENSGALG00000014631 | ACVR1B
Description
activin A receptor, type IB [Source:HGNC Symbol;Acc:HGNC:172]
Coordinates
chrLGE22C19W28_E50C23:1366-2736:-
Coord C1 exon
chrLGE22C19W28_E50C23:2566-2736
Coord A exon
chrLGE22C19W28_E50C23:1925-2081
Coord C2 exon
chrLGE22C19W28_E50C23:1366-1490
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTTTGCTCTCTTAGGAA
3' ss Score
9.94
5' ss Seq
ACGGTATGG
5' ss Score
8.47
Exon sequences
Seq C1 exon
CAGACAACGGGACGTGGACACAGCTGTGGCTCGTCTCCGATTACCACGAGCACGGATCTCTCTTTGACTACCTGAACCGCTACACGGTGACCATAGAGGGGATGATCAAGCTTGCTCTGTCTGCTGCCAGCGGGCTGGCCCACCTGCACATGGAGATCGTGGGTACTCAGG
Seq A exon
GAAAGCCTGGGATTGCTCACAGAGACCTGAAATCCAAGAACATCTTGGTGAAGAAGAATGGCACGTGTGCCATTGCTGACCTGGGGCTCGCTGTGCGCCACGACTCCGTCACGGACACCATTGACATCGCCCCGAACCAAAGGGTTGGAACCAAACG
Seq C2 exon
ATACATGGCTCCCGAGGTCCTGGATGAAACCATCAACATGAAGCACTTTGATTCATTTAAGTGTGCTGATATCTACGCCCTGGGTTTGGTCTACTGGGAGATCGCTCGCAGGTGCAACGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014631-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.7=100)
A:
PF0006920=Pkinase=FE(18.0=100)
C2:
PF0006920=Pkinase=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCGATTACCACGAGCAC
R:
GAGCGATCTCCCAGTAGACCA
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]