Special

BtaEX6020600 @ bosTau6

Exon Skipping

Gene
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSQ2]
Coordinates
chr5:28042980-28045695:-
Coord C1 exon
chr5:28045528-28045695
Coord A exon
chr5:28044097-28044253
Coord C2 exon
chr5:28042980-28043104
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTCTCCTTCACCAGGGA
3' ss Score
10.27
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
Exon sequences
Seq C1 exon
ATAACGGCACCTGGACACAGCTGTGGCTCGTGTCGGACTATCACGAGCACGGCTCCCTGTTTGACTATCTGAACCGGTACACGGTGACCATCGAGGGGATGATCAAGCTGGCCTTGTCTGCCGCCAGCGGGCTAGCACACCTGCACATGGAGATCGTGGGCACCCAAG
Seq A exon
GGAAACCTGGAATTGCTCATCGAGACTTAAAGTCAAAGAACATCCTGGTGAAGAAAAATGGCATGTGCGCCATCGCAGACCTGGGTTTGGCTGTCCGTCACGATGCGGTCACAGACACCATTGACATTGCCCCTAACCAGAGGGTGGGAACTAAACG
Seq C2 exon
ATACATGGCCCCCGAAGTGCTCGATGAAACCATCAACATGAAGCACTTCGACTCCTTTAAATGTGCTGATATCTATGCCCTCGGTCTTGTGTACTGGGAGATTGCTCGAAGATGCAACTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013555-'13-9,'13-8,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006920=Pkinase=FE(19.4=100)
A:
PF0006920=Pkinase=FE(18.1=100)
C2:
PF0006920=Pkinase=FE(14.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCGGACTATCACGAGCAC
R:
GCATCTTCGAGCAATCTCCCA
Band lengths:
254-411
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]