GgaEX6047494 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:26179734-26180493:+
Coord C1 exon
chrUn_random:26179734-26179945
Coord A exon
chrUn_random:26180034-26180190
Coord C2 exon
chrUn_random:26180371-26180493
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCATCTCCTGCACCCTGCAGGCT
3' ss Score
7.7
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GACCCCAGCATGTACCGCTGCGGGAAGAGCAAGGTGTTCTTCCGTGCCGGCCAGGTGGCATTCCTGGAGGAGCTGCGGTGCAGCCGGCTGCGTGCAGCCTGCACACTGCTGCAGAGGCACCTGCGGGGCTGGCTGGCACGGCGCCGCTTTGGCCGCATTCGTGCTGCAGCTCTGTGCCTGCAGCGTCACACCCGGGGCATGTTGGCACGCAG
Seq A exon
GCTCACCACTGAGCTGCGGAGGAGCAGAGCTGCGGTGGTGCTGCAGAAGAATGTGAGGATGGTGTTGGCTCGGCGCTCCTACCTGCGTGTGCGCCGGGCTGCCCTCACCATCCAGGCCTTCAGCCGGGGGATGTTTGCTCGACGCCTCTACCGCCAG
Seq C2 exon
ATGGTGCAGCACCAGAAAGCTGTGGTGCTCCAGGCTGCTGTGAGGGGTTGGTTGGTCCGCCAGCGCTACAACCGTCTGCGCGGGGCTGTGCTCTACCTGCAGTGCTGCTACCGCCGGGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012984-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.8=19.7),PF0061222=IQ=WD(100=29.6),PF0061222=IQ=PU(85.0=23.9)
A:
PF0061222=IQ=PD(10.0=3.8),PF0061222=IQ=WD(100=39.6),PF0061222=IQ=WD(100=39.6)
C2:
PF0061222=IQ=WD(100=51.2),PF136431=DUF4145=PU(15.4=29.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAAGGTGTTCTTCCGTG
R:
GACCAACCAACCCCTCACAG
Band lengths:
244-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]