MmuEX0030550 @ mm9
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75121316-75135949:+
Coord C1 exon
chr9:75121316-75121527
Coord A exon
chr9:75123278-75123443
Coord C2 exon
chr9:75135856-75135949
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTGCCATCTCTTCACCCAAGGAA
3' ss Score
5.79
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GATTCTAACCAGTACCAGTTTGGTAGAACCAAAATTTTCTTCAGAGCAGGACAAGTGGCTTACTTAGAGAAACTCCGCCTGGATAAACTGAGACAGGATTGTATTATGATCCAGAAACACGTGCGAGGCTGGCTGCAGAGGAGGAAGTTCCTCAGGGAGAGACAGGCTGCCCTGACAATCCAACGGTACTTCCGGGGTCAGCAGACAGTGAG
Seq A exon
GAAGGCCATCACTGCCACTGCTTTGAAGGAGGCCTGGGCGGCCATCATCCTCCAGAAGTATTGCCGAGGCTACCTGGTCCGTAACCTGTACCAGCTGATCCGTGTGGCCACCATCACCATCCAGGCACACACCAGGGGCTTCCTAGCCAGGAGGCGGTACCGGAAG
Seq C2 exon
ATGATCCCAGACTTTAAGCAGCAGATTTCAGAGCTGGAGAGGCAGAAGCAGGATCTTGAATCCCGCCTGAAGGAGCAGGCTGAGAAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590_MULTIEX2-6/27=5-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.781
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6)
A:
PF0061222=IQ=WD(100=37.5),PF0061222=IQ=WD(100=37.5)
C2:
PF131661=AAA_13=FE(16.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGAGCAGGACAAGTGGC
R:
TCCTTCAGGCGGGATTCAAGA
Band lengths:
248-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: