RnoEX6036557 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82217255-82219424:+
Coord C1 exon
chr8:82217255-82217466
Coord A exon
chr8:82218854-82219019
Coord C2 exon
chr8:82219278-82219424
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTCTCTCCACCCAAGGAA
3' ss Score
6.97
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GATTCTAACCAGTACCAGTTTGGCAGAACCAAGATTTTCTTCAGAGCAGGACAAGTGGCTTATTTAGAGAAACTCCGCTTGGATAAACTGAGGCAGGGCTGTATTGTGATCCAAAAGCATGTGCGTGGCTGGCTGCAGAGGAAGAAGTTCCTCCGAGAGAGACGAGCTGCCCTGACAATCCAGCAGTACTTCCGGGGCCAGCAGACAGTGAG
Seq A exon
GAAGGCCATCACTGCCACTGCCTTGAAGGAGGCCTGGGCAGCCATCATCCTCCAGAAGCATTGCCGAGGCTACCTGGTCCGTAACCTGTACCAGCTGATCCGTGTGGCCACCATCACCATCCAGGCACACACCAGGGGCTTCCTGGCCAGGAGGCGGTACCGGAAG
Seq C2 exon
TTGCTGCAGGAGCACAAGGCAGTGATCCTTCAGAAGTATGCGAGGGCATGGCTGGCCCGGCGCAGATTCCAGAACATCCGCAGGTTCGTGCTCAACATTCAGCTGACTTACAGGGTCCAGCGCTTGCAGAAGAAGCTGGAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-'24-26,'24-24,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6)
A:
PF0061222=IQ=WD(100=37.5),PF0061222=IQ=WD(100=37.5)
C2:
PF0061222=IQ=WD(100=42.9),PF131661=AAA_13=PU(4.2=20.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGAGCAGGACAAGTGGC
R:
TGCGGATGTTCTGGAATCTGC
Band lengths:
256-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]