HsaEX0041224 @ hg19
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:7604]
Coordinates
chr15:52531930-52536764:-
Coord C1 exon
chr15:52536553-52536764
Coord A exon
chr15:52534245-52534410
Coord C2 exon
chr15:52531930-52532076
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTTCATCCTTGTTAACCAAGGAA
3' ss Score
1.75
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATTCTAATCAGTACCAGTTTGGTAAAACCAAAATTTTCTTCAGAGCAGGACAAGTGGCTTATTTAGAGAAACTTCGATTGGATAAACTGAGGCAGAGTTGTGTTATGGTACAAAAGCACATGCGTGGCTGGCTCCAGAGGAAAAAATTCCTCCGAGAGAGACGAGCCGCCCTGATAATCCAGCAGTACTTCCGGGGTCAGCAAACTGTGAG
Seq A exon
GAAAGCTATTACTGCAGTGGCCTTAAAAGAAGCTTGGGCAGCCATAATCATTCAGAAGCACTGCCGCGGGTATCTTGTTCGCAGCCTGTATCAGTTGATTCGCATGGCCACCATCACAATGCAGGCCTACAGCCGAGGATTCCTGGCAAGGAGGAGGTATCGAAAG
Seq C2 exon
ATGCTGGAGGAACATAAGGCTGTGATCCTACAGAAATACGCACGGGCGTGGCTGGCCAGACGCAGATTCCAGAGTATCCGACGATTCGTGCTTAATATTCAGCTTACTTACAGGGTCCAGCGTTTGCAGAAAAAGTTGGAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6)
A:
PF0061222=IQ=WD(100=37.5),PF0061222=IQ=WD(100=37.5)
C2:
PF0061222=IQ=WD(100=42.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGAGCAGGACAAGTGGC
R:
TCGGATACTCTGGAATCTGCGT
Band lengths:
255-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)