DreEX6100642 @ danRer10
Exon Skipping
Gene
ENSDARG00000104235 | myo5c
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4679420-4680176:+
Coord C1 exon
chr25:4679420-4679631
Coord A exon
chr25:4679778-4679943
Coord C2 exon
chr25:4680030-4680176
Length
166 bp
Sequences
Splice sites
3' ss Seq
AAATAAACCTTACACCTTAGATG
3' ss Score
3.64
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GACTCCAATCAGTACAAGTTTGGTCGGACCAAGATCTTCTTCCGGGCCGGGCAGGTGGCGTATCTGGAGAAGCTGCGTTTAGATCATCTGCGAGCGGCTTGTGTGACCATCCAGAAGCACGTGAGGGGCTGGAGACAAAGACGCAGCTTTCTGAACATCAGACAGGCGGCTCTCATCATACAGCTGTACGTGCGCGGGAAGAAGCAGATCAG
Seq A exon
ATGCACAGTGACAGCTCAGGCGTTGAAGCAGGGCTGGGCTGCAATAGTGATCCAAAGACACTGCCGCGGTTTTCTGGTACGGAGGATTTACCAGCTCGTCCTGAGAGCTGCGGTCACCATACAGGCCTTCACCAGAGGATGGATGGCTCGCAAACGCTACAAAAAG
Seq C2 exon
ATGGTGGCAGAACATAAGGCTCTGGTTCTGCAGAAATATGCTCGAGCGTGGCTGGTGCGCCGGCGGTTTCAAACCATGCGGCGGCTGGTCATTAATGTTCAGCTATCATACAGAGTCCAGCAGCTGCGTAAGAAAGTAGAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235-'21-27,'21-26,22-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6)
A:
PF0061222=IQ=WD(100=37.5),PF0061222=IQ=WD(100=37.5)
C2:
PF0061222=IQ=WD(100=42.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATCCAGAAGCACGTGAG
R:
CTTTCTTACGCAGCTGCTGGA
Band lengths:
244-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]