GgaEX6047754 @ galGal3
Exon Skipping
Gene
ENSGALG00000013433 | FAM125A
Description
NA
Coordinates
chrUn_random:30294398-30294914:-
Coord C1 exon
chrUn_random:30294817-30294914
Coord A exon
chrUn_random:30294534-30294598
Coord C2 exon
chrUn_random:30294398-30294448
Length
65 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCTTTTCTTTTCAGCGA
3' ss Score
11.56
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GGCACCAGGGAAGCCCGTGGCTCAGTCTGGCTCCAGGCATGCATCGTTCACACTGCACAACTCAGCTGATGATGGCTCCAGCATCTACAACCTCTCAG
Seq A exon
CGATGGATGGAGTCCCTTTCACACTACACCCCAAATTCGAGCGCAGTCCCAAATCCGACAGCAGT
Seq C2 exon
GCCATCCTCACTGACCTGACTGTCAAATCGCTCGCTGACATTGAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013433-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(13.3=100)
A:
PF102404=DUF2464=FE(8.5=100)
C2:
PF102404=DUF2464=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGTGGCTCAGTCTGG
R:
CTTTCTCAATGTCAGCGAGCG
Band lengths:
135-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]