BtaEX0023340 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003914 | MVB12A
Description
Bos taurus family with sequence similarity 125, member A (MVB12A), mRNA. [Source:RefSeq mRNA;Acc:NM_001034283]
Coordinates
chr7:5611763-5612552:-
Coord C1 exon
chr7:5612446-5612552
Coord A exon
chr7:5612145-5612206
Coord C2 exon
chr7:5611763-5611819
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTCTCACCCACTTTCCTCAGCCA
3' ss Score
5.95
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CAAAGGTGGCTTCCCGGAGCGGACACTATCCAGACTGGGCTCTCGGGCTTCTACCCTGCGGAGGAACGACTCCATCTATGAGGCCTCCAACCTCTATGGCATCTCAG
Seq A exon
CCATGGATGGGGTTCCCTTCACGCTGCACCCCCGATTCGAGGGCAAGAGCTGTGGTCCCCTG
Seq C2 exon
GCCTTCTCTGCCTTTGCTGATCTGACCATCAAATCGCTGGCGGACATTGAGGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003914-'6-9,'6-7,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(14.3=100)
A:
PF102404=DUF2464=FE(7.9=100)
C2:
PF102404=DUF2464=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATCCAGACTGGGCTCTCG
R:
CTCAATGTCCGCCAGCGATTT
Band lengths:
134-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development